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Amltk parser

This file is part of the TPOT library.

The current version of TPOT was developed at Cedars-Sinai by: - Pedro Henrique Ribeiro (https://github.com/perib, https://www.linkedin.com/in/pedro-ribeiro/) - Anil Saini (anil.saini@cshs.org) - Jose Hernandez (jgh9094@gmail.com) - Jay Moran (jay.moran@cshs.org) - Nicholas Matsumoto (nicholas.matsumoto@cshs.org) - Hyunjun Choi (hyunjun.choi@cshs.org) - Miguel E. Hernandez (miguel.e.hernandez@cshs.org) - Jason Moore (moorejh28@gmail.com)

The original version of TPOT was primarily developed at the University of Pennsylvania by: - Randal S. Olson (rso@randalolson.com) - Weixuan Fu (weixuanf@upenn.edu) - Daniel Angell (dpa34@drexel.edu) - Jason Moore (moorejh28@gmail.com) - and many more generous open-source contributors

TPOT is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

TPOT is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with TPOT. If not, see http://www.gnu.org/licenses/.

tpot2_parser(node)

Convert amltk pipeline search space into a tpot2 pipeline search space.

Parameters:

Name Type Description Default
node Node

The node to convert.

 required

Returns:

Type Description
SearchSpace

The equivalent TPOT search space which can be optimized by TPOT.
Source code in tpot2/utils/amltk_parser.py 
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def tpot2_parser(
    node: Node,
    ):
    """
    Convert amltk pipeline search space into a tpot2 pipeline search space.

    Parameters
    ----------
    node: amltk.pipeline.Node
        The node to convert.

    Returns
    -------
    tpot2.search_spaces.base.SearchSpace
        The equivalent TPOT search space which can be optimized by TPOT.
    """

    if isinstance(node, Component):
        return component_to_estimatornode(node)
    elif isinstance(node, Sequential):
        return sequential_to_sequentialpipeline(node)
    elif isinstance(node, Choice):
        return choice_to_choicepipeline(node)
    elif isinstance(node, Fixed):
        return fixed_to_estimatornode(node)
    elif isinstance(node, Split):
        return split_to_unionpipeline(node)
    else:
        raise ValueError(f"Node type {type(node)} not supported")