Citing TPOT

If you use TPOT in a scientific publication, please consider citing at least one of the following papers:

Hernandez, J. G., Saini, A. K., Ghosh, A., & Moore, J. H. (2025). The tree-based pipeline optimization tool: Tackling biomedical research problems with genetic programming and automated machine learning. Patterns, 6(7).

BibTeX entry:

@article{hernandez2025tree,
  title={The tree-based pipeline optimization tool: Tackling biomedical research problems with genetic programming and automated machine learning},
  author={Hernandez, Jose Guadalupe and Saini, Anil Kumar and Ghosh, Attri and Moore, Jason H},
  journal={Patterns},
  volume={6},
  number={7},
  year={2025},
  publisher={Elsevier}
}

Ribeiro, P., Saini, A., Moran, J., Matsumoto, N., Choi, H., Hernandez, M., & Moore, J. H. (2024). TPOT2: A New Graph-Based Implementation of the Tree-Based Pipeline Optimization Tool for Automated Machine Learning. In Genetic programming theory and practice XX (pp. 1-17). Singapore: Springer Nature Singapore.

BitTex entry:

@incollection{ribeiro2024tpot2,
  title={TPOT2: A New Graph-Based Implementation of the Tree-Based Pipeline Optimization Tool for Automated Machine Learning},
  author={Ribeiro, Pedro and Saini, Anil and Moran, Jay and Matsumoto, Nicholas and Choi, Hyunjun and Hernandez, Miguel and Moore, Jason H},
  booktitle={Genetic programming theory and practice XX},
  pages={1--17},
  year={2024},
  publisher={Springer}
}

Randal S. Olson, Ryan J. Urbanowicz, Peter C. Andrews, Nicole A. Lavender, La Creis Kidd, and Jason H. Moore (2016). Automating biomedical data science through tree-based pipeline optimization. Applications of Evolutionary Computation, pages 123-137.

BibTeX entry:

@inbook{Olson2016EvoBio,
    author={Olson, Randal S. and Urbanowicz, Ryan J. and Andrews, Peter C. and Lavender, Nicole A. and Kidd, La Creis and Moore, Jason H.},
    editor={Squillero, Giovanni and Burelli, Paolo},
    chapter={Automating Biomedical Data Science Through Tree-Based Pipeline Optimization},
    title={Applications of Evolutionary Computation: 19th European Conference, EvoApplications 2016, Porto, Portugal, March 30 -- April 1, 2016, Proceedings, Part I},
    year={2016},
    publisher={Springer International Publishing},
    pages={123--137},
    isbn={978-3-319-31204-0},
    doi={10.1007/978-3-319-31204-0_9},
    url={http://dx.doi.org/10.1007/978-3-319-31204-0_9}
}

Randal S. Olson, Nathan Bartley, Ryan J. Urbanowicz, and Jason H. Moore (2016). Evaluation of a Tree-based Pipeline Optimization Tool for Automating Data Science. Proceedings of GECCO 2016, pages 485-492.

BibTeX entry:

@inproceedings{OlsonGECCO2016,
    author = {Olson, Randal S. and Bartley, Nathan and Urbanowicz, Ryan J. and Moore, Jason H.},
    title = {Evaluation of a Tree-based Pipeline Optimization Tool for Automating Data Science},
    booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference 2016},
    series = {GECCO '16},
    year = {2016},
    isbn = {978-1-4503-4206-3},
    location = {Denver, Colorado, USA},
    pages = {485--492},
    numpages = {8},
    url = {http://doi.acm.org/10.1145/2908812.2908918},
    doi = {10.1145/2908812.2908918},
    acmid = {2908918},
    publisher = {ACM},
    address = {New York, NY, USA},
}